As a de.NBI Cloud user you are able to add your publication to this list. Have a look at our wiki to find out how you can add your publications to this list. When doing so, please pay particular attention to the information on the desired type of citation.

Currently 51 publications with reference to de.NBI Cloud are listed.

Recently added publication

Detecting high-scoring local alignments in pangenome graphs
T. Schulz - R. Wittler, S. Rahmann, F. Hach et al. - Oxford University Press (OUP), 2021


A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data
M. Neumann - X. Xu, C. Smaczniak, J. Schumacher et al. - Cold Spring Harbor Laboratory, 2021

Topology identifies emerging adaptive mutations in SARS-CoV-2
M. Bleher - L. Hahn, J. Patiño-Galindo, M. Carrière et al. - Cold Spring Harbor Laboratory, 2021

AGNOSTOS-DB: a resource to unlock the uncharted regions of the coding sequence space
C. Vanni - M. Schechter, T. Delmont, A. Eren et al. - Cold Spring Harbor Laboratory, 2021

Peptidotriazolamers Inhibit Aβ(1–42) Oligomerization and Cross a Blood‐Brain‐Barrier Model
N. Tonali - L. Hericks, D. Schröder, O. Kracker et al. - Wiley, 2021

A large-scale comparative study on peptide encodings for biomedical classification
S. Spänig - S. Mohsen, G. Hattab, A. Hauschild et al. - Oxford University Press (OUP), 2021

Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P. Ebert - P. Audano, Q. Zhu, B. Rodriguez-Martin et al. - American Association for the Advancement of Science (AAAS), 2021

MegaGO: A Fast Yet Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets
P. Verschaffelt - T. Van Den Bossche, W. Gabriel, M. Burdukiewicz et al. - American Chemical Society (ACS), 2021

AB12PHYLO: an integrated pipeline for Maximum Likelihood phylogenetic inference from ABI trace data
L. Kaindl - C. Small, R. Stam - Cold Spring Harbor Laboratory, 2021

Fast visual exploration of mass spectrometry images with interactive dynamic spectral similarity pseudocoloring
K. Wüllems - A. Zurowietz, M. Zurowietz, R. Schneider et al. - Springer Science and Business Media LLC, 2021

Microbial Communities in Flexible Biomethanation of Hydrogen Are Functionally Resilient Upon Starvation
W. Logroño - D. Popp, M. Nikolausz, P. Kluge et al. - Frontiers Media SA, 2021

CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance
A. Wittig - F. Miranda, M. Hölzer, T. Altenburg et al. - Cold Spring Harbor Laboratory, 2021

Interpretable detection of novel human viruses from genome sequencing data
J. Bartoszewicz - A. Seidel, B. Renard - Oxford University Press (OUP), 2021

Deep learning-based real-time detection of novel pathogens during sequencing
J. Bartoszewicz - U. Genske, B. Renard - Cold Spring Harbor Laboratory, 2021

Deep Learning‐Based Automated Abdominal Organ Segmentation in the UK Biobank and German National Cohort Magnetic Resonance Imaging Studies
T. Kart - M. Fischer, T. Küstner, T. Hepp et al. - Ovid Technologies (Wolters Kluwer Health), 2021

Electroactive microorganisms in mouse feces
L. Rago - D. Popp, J. Heiker, F. Harnisch - Elsevier BV, 2021

Age-Net: An MRI-Based Iterative Framework for Brain Biological Age Estimation
K. Armanious - S. Abdulatif, W. Shi, S. Salian et al. - Institute of Electrical and Electronics Engineers (IEEE), 2021

LAPNet: Non-rigid Registration derived in k-space for Magnetic Resonance Imaging
T. Kustner - J. Pan, H. Qi, G. Cruz et al. - Institute of Electrical and Electronics Engineers (IEEE), 2021

Tuning the Biological Activity of RGD Peptides with Halotryptophans
I. Kemker - D. Schröder, R. Feiner, K. Müller et al. - American Chemical Society (ACS), 2020

Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesis
E. Redl - R. Sheibani-Tezerji, C. Cardona, P. Hamminger et al. - Life Science Alliance, LLC, 2020

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
D. Porubsky, . - P. Ebert, P. Audano, M. Vollger et al. - Springer Science and Business Media LLC, 2020

Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning
F. Stiehler - M. Steinborn, S. Scholz, D. Dey et al. - Oxford University Press (OUP), 2020

MOSGA: Modular Open-Source Genome Annotator
R. Martin - T. Hackl, G. Hattab, M. Fischer et al. - Oxford University Press (OUP), 2020

CoxBase: an online platform for epidemiological surveillance, visualization, analysis and typing of Coxiella burnetii genomic sequences
A. Fasemore - A. Helbich, M. Walter, T. Dandekar et al. - Cold Spring Harbor Laboratory, 2020

Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
I. Meyer-Cifuentes - J. Werner, N. Jehmlich, S. Will et al. - Springer Science and Business Media LLC, 2020

Fully Automated and Standardized Segmentation of Adipose Tissue Compartments via Deep Learning in 3D Whole-Body MRI of Epidemiologic Cohort Studies
T. Küstner - T. Hepp, M. Fischer, M. Schwartz et al. - Radiological Society of North America (RSNA), 2020

The environment drives microbial trait variability in aquatic habitats
S. Beier - A. Andersson, P. Galand, C. Hochart et al. - Wiley, 2020

Deep learning-based diatom taxonomy on virtual slides
M. Kloster - D. Langenkämper, M. Zurowietz, B. Beszteri et al. - Springer Science and Business Media LLC, 2020

Deep drilling reveals massive shifts in evolutionary dynamics after formation of ancient ecosystem
T. Wilke - T. Hauffe, E. Jovanovska, A. Cvetkoska et al. - American Association for the Advancement of Science (AAAS), 2020

A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane
H. Schiebenhoefer - K. Schallert, B. Renard, K. Trappe et al. - Springer Science and Business Media LLC, 2020

Draft Genome Sequences of Three Clostridia Isolates Involved in Lactate-Based Chain Elongation
B. Liu - D. Popp, H. Sträuber, H. Harms et al. - American Society for Microbiology, 2020

The landscape of SARS-CoV-2 RNA modifications
M. Miladi - J. Fuchs, W. Maier, S. Weigang et al. - Cold Spring Harbor Laboratory, 2020

Lake expansion elevates equilibrium diversity via increasing colonization
T. Hauffe - D. Delicado, R. Etienne, L. Valente - Wiley, 2020

Enhanced COVID-19 data for improved prediction of survival
W. Zeng - A. Gautam, D. Huson - Cold Spring Harbor Laboratory, 2020

Noninvasive Discrimination of Low and High-risk Pancreatic Intraductal Papillary Mucinous Neoplasms
S. Roth - P. Bose, M. Alhamdani, S. Mustafa et al. - Ovid Technologies (Wolters Kluwer Health), 2020

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
H. Nützmann - D. Doerr, A. Ramírez-Colmenero, J. Sotelo-Fonseca et al. - Proceedings of the National Academy of Sciences, 2020

Independent attenuation correction of whole body [18F]FDG-PET using a deep learning approach with Generative Adversarial Networks
K. Armanious - T. Hepp, T. Küstner, H. Dittmann et al. - Springer Science and Business Media LLC, 2020

A framework for designing miRNA-based distributed cell classifier circuits
M. Nowicka - H. Siebert - Cold Spring Harbor Laboratory, 2020

Fully Automated Segmentation and Shape Analysis of the Thoracic Aorta in Non–contrast-enhanced Magnetic Resonance Images of the German National Cohort Study
T. Hepp - M. Fischer, M. Winkelmann, S. Baldenhofer et al. - Ovid Technologies (Wolters Kluwer Health), 2020

MedGAN: Medical image translation using GANs
K. Armanious - C. Jiang, M. Fischer, T. Küstner et al. - Elsevier BV, 2020

Unsupervised Knowledge Transfer for Object Detection in Marine Environmental Monitoring and Exploration
M. Zurowietz - T. Nattkemper - Institute of Electrical and Electronics Engineers (IEEE), 2020

Detecting high-scoring local alignments in pangenome graphs
T. Schulz - R. Wittler, S. Rahmann, F. Hach et al. - Oxford University Press (OUP), 2021