Databases

We offer various databases suggested by our users that you can access from our S3 storage.

Please bear in mind: The database feature is a functionality that is still under development. An automatic check of the data provided is currently still pending, so we cannot guarantee that the data contained on the links corresponds to that of the specified databases.

You can use Minio Client to download them onto your machine. After installing the Minio Client, you can set an alias to access databases stored at the following locations:

Setting Minio Alias
Bielefeld:
mc alias set denbi https://openstack.cebitec.uni-bielefeld.de:8080 "" ""

alphafold

Version:
Total File Size: 155.63 GB
Total Files: 51
S3 Path:
mc cp --recursive denbi/data/alphafold/v4/databases .

blast_db

Version:
Total File Size: 504.69 GB
Total Files: 8
S3 Path:
mc cp --recursive denbi/data/blast_db/2023-07-31/FASTA .
Version:
Total File Size: 3.90 MB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/card/3.2.7/data .
data 3.90 MB
Download
Version:
Total File Size: 288.59 MB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/checkm/v1 .
content 288.59 MB
Download

checkm2

Version:
Total File Size: 1.74 GB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/checkm2/v2 .
content 1.74 GB
Download
Version:
Total File Size: 83.34 GB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/gtdb_tk/2023-06-09/auxiliary_files .
gtdbtk_data.tar.gz 83.34 GB
Download

plsdb

Version:
Total File Size: 3.46 GB
Total Files: 2
S3 Path:
mc cp --recursive denbi/data/plsdb/2021_06_23_v2 .
plasmids_meta.tar.bz2 1.77 GB
Download
plsdb.fna.bz2 1.68 GB
Download

uniref

Version:
Total File Size: 110.40 GB
Total Files: 2
S3 Path:
mc cp --recursive denbi/data/uniref/2023-11-08/uniref90 .
uniref90.xml.gz 66.56 GB
Download
uniref90.fasta.gz 43.85 GB
Download
Setting Minio Alias
Giessen:
mc alias set denbi https://s3.computational.bio.uni-giessen.de "" ""

alphafold

Version:
Total File Size: 155.63 GB
Total Files: 51
S3 Path:
mc cp --recursive denbi/data/alphafold/v4/databases .

blast_db

Version:
Total File Size: 504.69 GB
Total Files: 8
S3 Path:
mc cp --recursive denbi/data/blast_db/2023-07-31/FASTA .
Version:
Total File Size: 3.90 MB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/card/3.2.7/data .
data 3.90 MB
Download
Version:
Total File Size: 288.59 MB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/checkm/v1 .
content 288.59 MB
Download
Version:
Total File Size: 83.34 GB
Total Files: 1
S3 Path:
mc cp --recursive denbi/data/gtdb_tk/2023-06-09/auxiliary_files .
gtdbtk_data.tar.gz 83.34 GB
Download

plsdb

Version:
Total File Size: 3.46 GB
Total Files: 2
S3 Path:
mc cp --recursive denbi/data/plsdb/2021_06_23_v2 .
plasmids_meta.tar.bz2 1.77 GB
Download
plsdb.fna.bz2 1.68 GB
Download

uniref

Version:
Total File Size: 110.40 GB
Total Files: 2
S3 Path:
mc cp --recursive denbi/data/uniref/2023-11-08/uniref90 .
uniref90.xml.gz 66.56 GB
Download
uniref90.fasta.gz 43.85 GB
Download