Projects

Latest Project: MPXRadar: Genomic surveillance of monkeypox

  • Project Information
  • Principal Investigator: Stephan Fuchs
  • Workgroup: MF1 - Bioinformatics Unit
  • Project Type: Openstack
  • Project Lifetime: 6
  • Research Topics: Sequence analysis Database management Genetic variation Data visualisation Bioinformatics
  • Resources
  • Available virtual machines: 3
  • Total RAM: 64 GB
  • Total VCPU Cores: 30 GB
  • Number of Volumes: 3
  • Amount of volume storage: 210 GB
  • Amount of Object Storage: 100

This is the latest project for which the PI has agreed to publish the data on this page. The project shown here is therefore not necessarily the most recent project for which the project application has been approved. You can find all published projects below.

Omik Nanopore Basecaller
  • Project Information
  • Principal Investigator: Tillmann Lueders
  • Workgroup: Bayreuth Center of Ecology and Environmental Research, Chair of Ecological Microbiology
  • Project Type: Simple Vm
  • Project Lifetime: 2
  • Research Topics: Sequencing
  • Resources
  • Available virtual machines: 1
  • Total RAM: 64 GB
  • Total VCPU Cores: 14 GB
  • Number of Volumes: 1
  • Amount of volume storage: 1000 GB
Kidney Memory
  • Project Information
  • Research Topics: Computational biology
NFDI4Microbiota Virus Database (VirJen)
  • Project Information
  • Research Topics: Database management Virology
Kuberntes Cluster for Research Data Commons Applications
  • Project Information
  • Research Topics: Workflows Data integration and warehousing
Luxembourg-German-Indian Alliance on Neurodegenerative diseases and Therapeutics
  • Project Information
  • Principal Investigator: Manu Sharma
  • Research Topics: Sequence analysis Genomics Genotype and phenotype
LipidCompass - a comprehensive database for quantative lipidomics
  • Project Information
  • Principal Investigator: Nils Hoffmann
  • Project Type: Openstack
  • Research Topics: Lipids Molecular interactions, pathways and networks Biological databases Data visualisation Bioinformatics Analytical chemistry
QSM4SENIOR: Ultra-high Field MRI Quantitative Susceptibility Mapping reconstruction of the healthy Brain-aging cohort
  • Project Information
  • Affiliations: Horizon 2020
  • Research Topics: Medical imaging Computer science Biomedical science Neurology
DNAqua.Net - Metabarcoding pipeline
  • Project Information
  • Research Topics: Ecology Molecular biology
Multi-cloud enabled metagenome workflows (Giessen)
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Research Topics: Metagenomics
Pangenomics Benchmark & Workbench (Server)
  • Project Information
  • Workgroup: Genome Informatics
  • Affiliations: Horizon 2020
  • Research Topics: Comparative genomics
Multi-cloud enabled metagenome workflows (Bielefeld)
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Research Topics: Metagenomics
Flavonoid biosynthesis of Urtica dioica
  • Project Information
  • Principal Investigator: Boas Pucker
  • Workgroup: Plant Biotechnology and Bioinformatics
  • Project Type: Simple Vm
  • Project Lifetime: 6
  • Research Topics: Sequence analysis Phylogeny Gene expression
  • Resources
  • Available virtual machines: 1
  • Total RAM: 4 GB
  • Total VCPU Cores: 2 GB
  • Number of Volumes: 1
  • Amount of volume storage: 20 GB
WGS - pipeline
  • Project Information
  • Principal Investigator: Andreas Jung
  • Workgroup: Jung Lab
  • Project Type: Openstack
  • Project Lifetime: 6
  • Research Topics: Sequence sites, features and motifs
  • Resources
  • Available virtual machines: 1
  • Total RAM: 256 GB
  • Total VCPU Cores: 32 GB
  • Number of Volumes: 2
  • Amount of volume storage: 200 GB
  • Amount of Object Storage: 4500
Expression Atlas of Ectocarpus and other brown algae
  • Project Information
  • Principal Investigator: Susana Coelho
  • Research Topics: Gene expression
Differential regulation of gene expression through DNA methylation: investigating the molecular link between early life adversit
  • Project Information
  • Workgroup: Molecular Psychiatry
  • Research Topics: Gene expression Molecular interactions, pathways and networks Gene transcription Human biology RNA-Seq DNA methylation Epigenomics Transcriptomics Psychiatry
Database development for PrecisionTox project
  • Project Information
  • Principal Investigator: Robert Russell
  • Workgroup: Russell Group
  • Project Type: Openstack
  • Project Lifetime: 6
  • Affiliations: Horizon 2020
  • Research Topics: Toxicology
  • Resources
  • Available virtual machines: 2
  • Total RAM: 16 GB
  • Total VCPU Cores: 8 GB
  • Number of Volumes: 2
  • Amount of volume storage: 1000 GB
SPAAM Summer School: Introduction to Ancient Metagenomics
  • Project Information
  • Project Type: Simple Vm
  • Project Lifetime: 6
  • Research Topics: Metagenomics
  • Resources
  • Available virtual machines: 32
  • Total RAM: 1024 GB
  • Total VCPU Cores: 448 GB
  • Number of Volumes: 34
  • Amount of volume storage: 3000 GB
Deploying and exploring omics data sets via web apps from an offline repository via the MAMPOK tool
  • Project Information
  • Principal Investigator: Mario Looso
  • Workgroup: Bioinformatics Core
  • Research Topics: Sequence analysis Gene expression Computational biology Protein expression
  • Resources
  • Available virtual machines: 4
  • Total RAM: 1024 GB
  • Total VCPU Cores: 112 GB
  • Number of Volumes: 3
  • Amount of volume storage: 20 GB
OTCgenomics
  • Project Information
  • Principal Investigator: Matthias Labrenz
  • Affiliations: BMBF
  • Research Topics: Sequence analysis Microbial ecology
Flower Pigmentation Analysis
  • Project Information
  • Principal Investigator: Boas Pucker
  • Workgroup: Plant Biotechnology and Bioinformatics
  • Project Lifetime: 7
  • Research Topics: Sequence analysis Phylogeny Gene expression Genetic variation
  • Resources
  • Available virtual machines: 1
  • Total RAM: 16 GB
  • Total VCPU Cores: 8 GB
  • Number of Volumes: 1
  • Amount of volume storage: 50 GB
DNA-Aeon
  • Project Information
  • Research Topics: Bioinformatics DNA mutation Machine learning
Large-scale recovery of metagenome-assemble genomes from marine samples
  • Project Information
  • Principal Investigator: Ulisses Nunes da Rocha
  • Project Type: Openstack
  • Research Topics: Phylogenomics
  • Resources
  • Available virtual machines: 15
  • Total RAM: 2560 GB
  • Total VCPU Cores: 288 GB
  • Number of Volumes: 3
  • Amount of volume storage: 100 GB
Genomic and Epigenomic Variation in different Riesling Grapevine clones
  • Project Information
  • Principal Investigator: Kai Peter Voss-Fels
  • Workgroup: Rebengenomik
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Sequence analysis Phylogeny Mapping Genetic variation Sequence composition, complexity and repeats
  • Resources
  • Available virtual machines: 10
  • Total RAM: 1024 GB
  • Total VCPU Cores: 188 GB
  • Number of Volumes: 4
  • Amount of volume storage: 8000 GB
Risikostratifizierung in der Kardiologie mittels Kuenstlicher Intelligenz
  • Project Information
  • Principal Investigator: Till Keller
  • Workgroup: CardioIQ
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Bioinformatics Cardiology Machine learning
Volumetries in Moyamoya patients
  • Project Information
  • Research Topics: Medical imaging
RhizoTraits - RhizoMicro
  • Project Information
  • Principal Investigator: Tillmann Lueders
  • Workgroup: Ecological Microbiology
  • Affiliations: BMBF
  • Research Topics: Sequence analysis Microbial ecology Agricultural science
Benchmark of membrane segmentation for Cryo-ET
  • Project Information
  • Principal Investigator: Tingying Peng
  • Workgroup: Helmholtz AI
  • Research Topics: Computational biology
  • Resources
  • Available virtual machines: 3
  • Total RAM: 320 GB
  • Total VCPU Cores: 76 GB
  • Number of Volumes: 3
  • Amount of volume storage: 3000 GB
Finding transcription factors in plant genomes
  • Project Information
  • Principal Investigator: Boas Pucker
  • Workgroup: Plant Biotechnology and Bioinformatics
  • Project Lifetime: 9
  • Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Gene expression Protein folds and structural domains Protein properties
  • Resources
  • Available virtual machines: 1
  • Total RAM: 8 GB
  • Total VCPU Cores: 4 GB
  • Number of Volumes: 1
  • Amount of volume storage: 100 GB
Organellar DNA Detection
  • Project Information
  • Research Topics: Genomics Genome annotation
Methylation-based classification of brain tumors using nanopore sequencing (nanoDx): a prospective, multicentric evaluation
  • Project Information
  • Principal Investigator: Philipp Euskirchen
  • Workgroup: Molecular Neuro-Oncology
  • Research Topics: Oncology Epigenetics Machine learning
Illumination correction for light-sheet microscopy
  • Project Information
  • Principal Investigator: Tingying Peng
  • Workgroup: Helmholtz AI
  • Project Type: Openstack
  • Project Lifetime: 6
  • Research Topics: Bioimaging
  • Resources
  • Available virtual machines: 2
  • Total RAM: 128 GB
  • Total VCPU Cores: 32 GB
  • Number of Volumes: 2
  • Amount of volume storage: 1000 GB
Gluten related disorder under the microscope
  • Project Information
  • Research Topics: Cell biology Light microscopy Molecular medicine Disease pathways
Theodoxus fluviatilis genomes 2021
  • Project Information
  • Principal Investigator: Jan-Peter Hildebrandt
  • Workgroup: Animal physiology and biochemistry
  • Research Topics: Whole genome sequencing
Basecalling for Crop Plant ONT data
  • Project Information
  • Research Topics: Sequence analysis Computational biology Sequence assembly Plant biology Comparative genomics Epigenetics Whole genome sequencing
Oemik Functional Microbiome Analysis
  • Project Information
  • Research Topics: Sequence analysis Metagenomics
Investigate the mechanism of Pemphigus Vulgaris by omics data analysis and integration
  • Project Information
  • Principal Investigator: Hauke Busch
  • Workgroup: Computational biology
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Bioinformatics
  • Resources
  • Available virtual machines: 3
  • Total RAM: 448 GB
  • Total VCPU Cores: 64 GB
  • Number of Volumes: 3
  • Amount of volume storage: 500 GB
  • Amount of Object Storage: 2000
Omics in Huntington disease
  • Project Information
  • Principal Investigator: Andreas Neueder
  • Workgroup: Experimental Neurology
  • Project Lifetime: 12
  • Research Topics: Repeat sequences Human disease RNA splicing Neurobiology
  • Resources
  • Available virtual machines: 2
  • Total RAM: 256 GB
  • Total VCPU Cores: 64 GB
  • Number of Volumes: 3
  • Amount of volume storage: 2000 GB
Genomics assemblies and massive resequencing of birds of prey
  • Project Information
  • Research Topics: Function analysis Phylogenomics Microbiology Genomics Vertebrates Biodiversity Parasitology Infectious disease
Jupyter Hub
  • Project Information
  • Principal Investigator: Matthias Schlesner
  • Workgroup: Biomedizinische Informatik, Data Mining und Data Analytics
  • Project Type: Simple Vm
  • Project Lifetime: 14
  • Research Topics: Sequence analysis
  • Resources
  • Available virtual machines: 5
  • Total RAM: 320 GB
  • Total VCPU Cores: 140 GB
  • Number of Volumes: 2
  • Amount of volume storage: 2200 GB
cBioPortal server
  • Project Information
  • Principal Investigator: Matthias Schlesner
  • Workgroup: Biomedical Informatics, Data Mining and Data Analytics
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Genomics Oncology Transcriptomics
  • Resources
  • Available virtual machines: 4
  • Total RAM: 128 GB
  • Total VCPU Cores: 64 GB
  • Number of Volumes: 4
  • Amount of volume storage: 3500 GB
Dedicated Protein and RNA Structure Prediction Capabilities for the Wagner Lab
  • Project Information
  • Principal Investigator: Samuel Wagner
  • Research Topics: Small molecules Microbiology Pathogens Transmembrane protein prediction
SSAM-lite-server
  • Project Information
  • Research Topics: Imaging High-throughput sequencing Transcriptomics
Metagenomics Summerschool 2021
  • Project Information
  • Research Topics: Sequence analysis Metagenomics
FlowSoFine
  • Project Information
  • Principal Investigator: Stefan Janssen
  • Workgroup: Algorithmic Bioinformatics
  • Research Topics: Microbial ecology
SILVA release
  • Project Information
  • Research Topics: Biological databases rRNA
Analysis of flavonoid biosynthesis pathway across plant species
  • Project Information
  • Principal Investigator: Boas Pucker
  • Workgroup: Plant Biotechnology and Bioinformatics
  • Project Type: Simple Vm
  • Project Lifetime: 9
  • Research Topics: Phylogeny Genomics Splice sites
  • Resources
  • Available virtual machines: 1
  • Total RAM: 32 GB
  • Total VCPU Cores: 14 GB
  • Number of Volumes: 1
  • Amount of volume storage: 100 GB
Generative models to disentangle spatial components of cellular variation
  • Project Information
  • Research Topics: Computational biology Machine learning
Genetic analysis of Cercospora leaf spot resistance in wild and cultivated beets
  • Project Information
  • Research Topics: Agricultural science
LIFS Portal
  • Project Information
  • Research Topics: Lipids Bioinformatics Mass spectrometry
GPU_BASE
  • Project Information
  • Research Topics: Genomics Plant biology
BaktaWeb
  • Project Information
  • Research Topics: Sequence annotation Genome annotation
4D Controls-based denoising
  • Project Information
  • Research Topics: Medical imaging MRI Applied mathematics
Computational Psychiatry
  • Project Information
  • Principal Investigator: Tobias Kaufmann
  • Research Topics: Computational biology Medical imaging Genetics Neurobiology Psychiatry
HTS of Xcc mutant strains using CellProfiler
  • Project Information
  • Research Topics: Imaging Microbiology
Bioimage.io Model Zoo
  • Project Information
  • Principal Investigator: Florian Jug
  • Workgroup: Jug Lab
  • Project Type: Openstack
  • Project Lifetime: 22
  • Affiliations: BMBF
  • Research Topics: Cell biology Bioinformatics Bioimaging Machine learning
  • Resources
  • Available virtual machines: 7
  • Total RAM: 800 GB
  • Total VCPU Cores: 172 GB
  • Number of Volumes: 100
  • Amount of volume storage: 1024 GB
  • Amount of Object Storage: 100
Machine Learning for Protein Identification
  • Project Information
  • Research Topics: Proteomics Machine learning
Extending cross-linking mass spectrometry with cleavable cross-linkers
  • Project Information
  • Research Topics: Protein interactions Proteomics Protein structure analysis
Determination of the conformational loop flexibility of strongly neutralizing COV-2 antibody fragments.
  • Project Information
  • Research Topics: Protein interactions Protein structure analysis Structure prediction Molecular dynamics
Machine Learning for Antibiiotic Resistance 2
  • Project Information
  • Research Topics: Bioinformatics Machine learning
RNA-RNA interaction prediction evaluation
  • Project Information
  • Research Topics: Nucleic acid structure analysis
Identification of causative variants in patients with genetically unclassified severe congenital neutropenia
  • Project Information
  • Principal Investigator: Maksim Klimiankou
  • Workgroup: Internal Medicine II, Division of Translational Oncology
  • Project Type: Openstack
  • Project Lifetime: 24
  • Research Topics: Sequencing Molecular genetics
  • Resources
  • Available virtual machines: 1
  • Total RAM: 256 GB
  • Total VCPU Cores: 32 GB
  • Number of Volumes: 1
  • Amount of volume storage: 6000 GB
WebDECIMER
  • Project Information
  • Principal Investigator: Christoph Steinbeck
  • Workgroup: Steinbeck group
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Small molecules Literature analysis Literature data resources
  • Resources
  • Available virtual machines: 1
  • Total RAM: 64 GB
  • Total VCPU Cores: 16 GB
  • Number of Volumes: 1
  • Amount of volume storage: 80 GB
  • Amount of Object Storage: 10
Automated Analysis of Microscopy Images Using Deep Learning
  • Project Information
  • Principal Investigator: Rohr Karl
  • Workgroup: Biomedical Computer Vision Group
  • Affiliations: BMBF Elixir Project
  • Research Topics: Cell biology Biomedical science Bioimaging Light microscopy Machine learning
de.NBI Training Event: "The Linux Command Line: From Basic Commands to Shell Scripting"
  • Project Information
  • Workgroup: Bioinformatics Core
  • Research Topics: Computational biology Bioinformatics Computer science
Diatom Virtual Slide Storage
  • Project Information
  • Research Topics: Ecology Taxonomy Bioimaging Light microscopy Machine learning Freshwater biology
Bellman's GAP for deep learning
  • Project Information
  • Principal Investigator: Stefan Janssen
  • Workgroup: Algorithmic Bioinformatics
  • Project Type: Simple Vm
  • Project Lifetime: 24
  • Research Topics: Computer science
  • Resources
  • Available virtual machines: 2
  • Total RAM: 80 GB
  • Total VCPU Cores: 24 GB
  • Number of Volumes: 3
  • Amount of volume storage: 50 GB
RNAProNet - Infer regulatory behavior from RNA protein binding events
  • Project Information
  • Principal Investigator: Rolf Backofen
  • Workgroup: Chair for Bioinformatics
  • Project Type: Simple Vm
  • Project Lifetime: 24
  • Affiliations: BMBF
  • Research Topics: Protein interactions High-throughput sequencing Machine learning
  • Resources
  • Available virtual machines: 1
  • Total RAM: 64 GB
  • Total VCPU Cores: 16 GB
  • Number of Volumes: 3
  • Amount of volume storage: 1000 GB
ECF Hub - An interactive database for ECF sigma factors
  • Project Information
  • Principal Investigator: Alexander Goesmann
  • Workgroup: Professur für Systembiologie
  • Project Type: Openstack
  • Project Lifetime: 12
  • Affiliations: BMBF
  • Research Topics: Biological databases Protein databases Synthetic biology
  • Resources
  • Available virtual machines: 3
  • Total RAM: 48 GB
  • Total VCPU Cores: 24 GB
  • Number of Volumes: 20
  • Amount of volume storage: 750 GB
  • Amount of Object Storage: 750
EMIC sequencing pipeline
  • Project Information
  • Research Topics: Sequence analysis Microbial ecology Environmental science
Evaluation of genome assembly tools for Triticeae
  • Project Information
  • Principal Investigator: HARMEET SINGH CHAWLA
  • Workgroup: Plant Genome and System Biology
  • Project Type: Openstack
  • Project Lifetime: 6
  • Research Topics: Plant biology Whole genome sequencing
  • Resources
  • Available virtual machines: 1
  • Total RAM: 3000 GB
  • Total VCPU Cores: 64 GB
  • Number of Volumes: 3
  • Amount of volume storage: 50000 GB
Cis-regulatory atlas of Brassica napus
  • Project Information
  • Research Topics: Gene expression Genetic variation Genomics Bioinformatics Gene regulation Plant biology DNA structural variation
SIMBA Metagenome Training Course
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Project Type: Simple Vm
  • Project Lifetime: 3
  • Affiliations: Horizon 2020
  • Research Topics: Sequence analysis Metagenomics
  • Resources
  • Available virtual machines: 2
  • Total RAM: 96 GB
  • Total VCPU Cores: 42 GB
  • Number of Volumes: 2
  • Amount of volume storage: 500 GB
SFB1324 - Data Exchange and Collaborative Analysis
  • Project Information
  • Research Topics: Sequence analysis Protein structure analysis Cell biology Imaging Functional genomics Signaling pathways
VascuShare: a vascular imaging data repository
  • Project Information
  • Principal Investigator: Kyle Harrington
  • Research Topics: Imaging Bioinformatics Bioimaging
Applying - Helixer, Gene Structural Prediction with Deep Learning
  • Project Information
  • Principal Investigator: Andreas Weber
  • Workgroup: Institute of Plant Biochemistry
  • Project Type: Openstack
  • Project Lifetime: 10
  • Research Topics: Sequence analysis Gene structure Machine learning
  • Resources
  • Available virtual machines: 3
  • Total RAM: 384 GB
  • Total VCPU Cores: 60 GB
  • Number of Volumes: 6
  • Amount of volume storage: 3000 GB
  • Amount of Object Storage: 1000
Covalent and kinetic trapping repair machinery for structural and functional studies
  • Project Information
  • Research Topics: Protein interactions Protein structure analysis Enzymes Nucleic acids
ChIP-seq / ATAC-seq workshop
  • Project Information
  • Principal Investigator: Herrmann Carl
  • Workgroup: HDSU
  • Project Type: Simple Vm
  • Project Lifetime: 15
  • Research Topics: Computational biology
  • Resources
  • Available virtual machines: 2
  • Total RAM: 512 GB
  • Total VCPU Cores: 64 GB
  • Number of Volumes: 2
  • Amount of volume storage: 500 GB
Decoding Context-Dependent Genetic Networks in vivo
  • Project Information
  • Principal Investigator: Stegle Oliver
  • Workgroup: ERC Decode Project
  • Project Type: Openstack
  • Affiliations: Horizon 2020
  • Research Topics: Computational biology
de.NBI - CeBiTec Nanopore Workshop - Best Practice and SARS-CoV-2 applications
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: BiGi
  • Project Type: Simple Vm
  • Project Lifetime: 3
  • Affiliations: BMBF
  • Research Topics: Sequence analysis Sequencing Sequence assembly Virology
  • Resources
  • Available virtual machines: 22
  • Total RAM: 704 GB
  • Total VCPU Cores: 352 GB
  • Number of Volumes: 30
  • Amount of volume storage: 1500 GB
Using machine learning approaches to predict antimicrobial resistance from bacterial genome sequences
  • Project Information
  • Principal Investigator: Oliver Kohlbacher
  • Project Type: Simple Vm
  • Project Lifetime: 9
  • Research Topics: Pathogens Machine learning
Alignment- and reference-free Phylogenomics
  • Project Information
  • Principal Investigator: Jens Stoye
  • Workgroup: Genome Informatics
  • Project Type: Simple Vm
  • Project Lifetime: 24
  • Research Topics: Sequence analysis Phylogeny
  • Resources
  • Available virtual machines: 1
  • Total RAM: 1024 GB
  • Total VCPU Cores: 32 GB
  • Number of Volumes: 2
  • Amount of volume storage: 3000 GB
Integrative analysis of common and rare high-impact variants for a more comprehensive genetic risk assessment.
HuMAGs - exploring how microbes co-exist in human microbiomes
  • Project Information
  • Principal Investigator: Ulisses Nunes da Rocha
  • Workgroup: Microbia Data Science
  • Project Type: Openstack
  • Project Lifetime: 28
  • Research Topics: Sequence analysis Computational biology Function analysis Biological databases Phylogenomics Metagenomics Microbiology Human disease Microbial ecology
  • Resources
  • Available virtual machines: 29
  • Total RAM: 4352 GB
  • Total VCPU Cores: 768 GB
  • Number of Volumes: 3
  • Amount of volume storage: 100000 GB
Cloud User Meeting 2020
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Project Type: Openstack
  • Research Topics: Bioinformatics
  • Resources
  • Available virtual machines: 100
  • Total RAM: 1300 GB
  • Total VCPU Cores: 650 GB
  • Number of Volumes: 50
  • Amount of volume storage: 275 GB
  • Amount of Object Storage: 100
Meet-U 4EU+ Teaching project
  • Project Information
  • Principal Investigator: Herrmann Carl
  • Research Topics: Computational biology
Using NLP-Networks (Transformers) for human genome data
  • Project Information
  • Research Topics: Computational biology Bioinformatics Biomedical science Sequence classification
SIRIUS back end
  • Project Information
  • Workgroup: Chair of Bioinformatics
  • Project Type: Openstack
  • Research Topics: Metabolites Computer science Mass spectrometry Metabolomics Computational chemistry
Sequence-based prediction of Translational Efficiency
  • Project Information
  • Principal Investigator: Pascal Falter-Braun
  • Workgroup: Network Biology
  • Research Topics: Sequence analysis Protein interactions Computational biology
SDC BioDATEN
  • Project Information
  • Research Topics: Ontology and terminology Computational biology Database management
Generation of Mass Spectrometry Decoy Spectra with Adversarial Autoencoders
  • Project Information
  • Research Topics: Proteomics Mass spectrometry
CovRadar: a web application for SARS-CoV-2 molecular surveillance
  • Project Information
  • Principal Investigator: Stephan Fuchs
  • Workgroup: Methodology and Research Infrastructure - MF1: Bioinformatics
  • Project Type: Openstack
  • Project Lifetime: 30
  • Research Topics: Sequence analysis Data visualisation Bioinformatics Virology Protein variants Public health and epidemiology
  • Resources
  • Available virtual machines: 3
  • Total RAM: 1061 GB
  • Total VCPU Cores: 112 GB
  • Number of Volumes: 5
  • Amount of volume storage: 5120 GB
  • Amount of Object Storage: 1024
Innovative benchmarking approaches to improve Computational Methods for big data analysis in Health.
  • Project Information
  • Principal Investigator: Herrmann Carl
  • Workgroup: Health Data Science Unit, Medical Faculty
  • Research Topics: Computational biology Genomics Gene regulation Oncology
Proteomics of the Springtail Folsomia Candida
  • Project Information
  • Principal Investigator: Oliver Kohlbacher
  • Workgroup: Applied Bioinformatics
  • Research Topics: Proteomics Protein expression
Modeling and simulation of multicellular processes during tissue morphogenesis
  • Project Information
  • Principal Investigator: Lutz Brusch
  • Workgroup: Center for Information Services and High Performance Computing
  • Research Topics: Computational biology Personalised medicine
Ganon in the 2 nd round of the CAMI II challenge
  • Project Information
  • Research Topics: Sequence analysis Metagenomics
Myzel - Medical Cloud Platform
  • Project Information
  • Principal Investigator: Maier-Hein Klaus
  • Workgroup: Medical Image Computing
  • Project Type: Openstack
  • Project Lifetime: 12
  • Research Topics: Medical imaging Natural language processing
  • Resources
  • Available virtual machines: 2
  • Total RAM: 384 GB
  • Total VCPU Cores: 60 GB
  • Number of Volumes: 2
  • Amount of volume storage: 2000 GB
Wheat Structural Variant Calling
  • Project Information
  • Research Topics: Structure analysis Genetic variation
A R Shiny based web server for performing BLAST queries on novel SARS-CoV2 sequences
  • Project Information
  • Principal Investigator: Herrmann Carl
  • Workgroup: Health Data Science Unit
  • Research Topics: Sequence analysis Infectious disease
kmer based spa typing
  • Project Information
  • Principal Investigator: Gunnar W. Klau
  • Workgroup: Algorithmische Bioinformatik
  • Project Type: Simple Vm
  • Project Lifetime: 3
  • Resources
  • Available virtual machines: 1
  • Total RAM: 256 GB
  • Total VCPU Cores: 32 GB
  • Number of Volumes: 1
  • Amount of volume storage: 500 GB
Biohackathon Coivd19
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Project Type: Openstack
  • Project Lifetime: 6
  • Resources
  • Available virtual machines: 3
  • Total RAM: 192 GB
  • Total VCPU Cores: 96 GB
  • Number of Volumes: 3
  • Amount of volume storage: 20 GB
denbivsvirus Bielefeld
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Project Type: Openstack
  • Project Lifetime: 30
  • Resources
  • Available virtual machines: 5
  • Total RAM: 636 GB
  • Total VCPU Cores: 88 GB
  • Number of Volumes: 5
  • Amount of volume storage: 2000 GB
  • Amount of Object Storage: 500
WirVsVirus Hackathon der Bundesregierung
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Project Type: Openstack
Benchmarking proteomics nextflow workflows on PRIDE data
  • Project Information
  • Principal Investigator: Oliver Kohlbacher
  • Workgroup: Applied Bioinformatics
Performance improvements of DNA methylome deconvolution software MeDeCom
visualization webtool for deep learning features
de.NBI Training
  • Project Information
  • Principal Investigator: Malik Alawi
  • Workgroup: Bioinformatics Core
Petasearch Database Creation
Gene Structural Prediction with Deep Learning
  • Project Information
  • Principal Investigator: Andreas Weber
  • Workgroup: Plant Biochemistry
  • Project Type: Openstack
Understanding gluten related disorders at the molecular level
  • Project Information
  • Principal Investigator: Veronica Dodero
Rheuma.Vor.Transcriptomics
  • Project Information
  • Principal Investigator: Schwarting Andreas
  • Workgroup: Ambulanz für Rheumatologie,
  • Project Type: Simple Vm
metagenomic analysis of human infant fecal sample
  • Project Information
  • Principal Investigator: Daniel Huson
  • Workgroup: algorithm in bioinformatics
  • Project Type: Openstack
  • Project Lifetime: 36
  • Resources
  • Available virtual machines: 4
  • Total RAM: 1024 GB
  • Total VCPU Cores: 128 GB
  • Number of Volumes: 4
  • Amount of volume storage: 20000 GB
  • Amount of Object Storage: 150
Elucidating the origin of planktonic foraminifera
  • Project Information
  • Principal Investigator: Michal Kucera
  • Workgroup: Micropaleontology
  • Project Lifetime: 36
  • Resources
  • Available virtual machines: 10
  • Total RAM: 2560 GB
  • Total VCPU Cores: 320 GB
  • Number of Volumes: 10
  • Amount of volume storage: 10000 GB
Type Strain Genome Server (TYGS)
  • Project Information
  • Principal Investigator: Markus Göker
  • Workgroup: Phylogenomics (Department of Bioinformatics)
  • Project Type: Openstack
Bioschemas knowledge graph - BH2019Europe
GCB 2019 Cloud Tutorial
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: de.NBI Cloud Team
  • Project Type: Openstack
  • Project Lifetime: 1
  • Affiliations: BMBF
  • Resources
  • Available virtual machines: 60
  • Total RAM: 3840 GB
  • Total VCPU Cores: 1680 GB
  • Number of Volumes: 25
  • Amount of volume storage: 200 GB
  • Amount of Object Storage: 1000
Sustainable Innovation of Microbiome Applications in the Food System
  • Project Information
  • Principal Investigator: Alexander Sczyrba
  • Workgroup: Computational Metagenomics
  • Project Type: Openstack