Projects

SKILL - Semantic Knowledge Inference in Life Sciences with Language models

RNA sequencing analysis of cardiac hypertrophy using Galaxy

Computational Methods for Antimicrobial Peptide Design and Optimization

GSCN workshop 2024

Metabolite profiling of medicinal plant extracts from Cameroon

• Project Information
• Principal Investigator: Norbert Sewald
• Workgroup: Organic and Bioorganic Chemistry - OC3
• Project Type: Simple Vm
• Project Lifetime: 6

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 1
• Amount of volume storage: 2024 GB

Assessing the capabilities of gene network foundation models

PATH2XNAT

• Project Information
• Research Topics: Computational biology

Designing Binders for plant proteins

• Project Information
• Principal Investigator: Steffen Neumann
• Project Type: Simple Vm
• Project Lifetime: 4
• Research Topics: Plant biology

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 14 GB
• Number of Volumes: 1
• Amount of volume storage: 100 GB

ONTbasecalling

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 6
• Research Topics: Sequence analysis Genomics

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 14 GB
• Number of Volumes: 1
• Amount of volume storage: 5000 GB

Computing skills for reproducible research - Software Carpentry 2025

• Project Information
• Research Topics: Data visualisation Bioinformatics Workflows Software engineering

crossNN: an explainable framework for cross-platform DNA methylation-based classification of cancer

LinuxIntro

• Project Information
• Research Topics: Bioinformatics

PlantGeneDuplications

• Project Information
• Research Topics: Sequence analysis Gene expression Phylogenetics

Synthesizability assessment of AI-generated molecules

• Project Information
• Principal Investigator: Alexander Schönhuth
• Workgroup: Genome Data Science

Phylogenetic analysis of Chaang fermentation microbes

Genotyping on whole genome sequencing data of Plasmodium falciparum

• Project Information
• Workgroup: Clinical parsitology

scRNA seq analysis pipeline for mesenchymal stem cell data

• Project Information
• Research Topics: RNA-Seq

Geogenomic Archaeology Campus Tuebingen Explorer

WisPerMed Search Engine for Biomedical literature retrieval

Bounding causal effects with respect to graph misspecification

• Project Information
• Principal Investigator: Niki Kilbertus

CRC1371 - Microbiome Signatures

Benchmarking single cell library preparation

• Project Information
• Research Topics: Cell biology

Web Applications for Bioinformatics Pipelines in Protein-Protein Interactions

• Project Information
• Principal Investigator: Oliver Kohlbacher
• Workgroup: Protein Evolution Department and Applied Bioinformatics Group

InteractOA - Showcasing the representation of knowledge from scientific literature in Wikidata

• Project Information
• Principal Investigator: Konrad U. Förstner
• Project Type: Openstack

Mutation rate Assembly and curation in Brassica species

• Project Information
• Research Topics: Sequence analysis Mapping Structural genomics Comparative genomics Whole genome sequencing

Knowledge Graph Infrastructure for the German National Research Data Infrastructure

• Project Information
• Principal Investigator: Konrad U. Förstner
• Project Type: Openstack
• Research Topics: Data integration and warehousing

Human pathogenic fungi metagenome assembled genomes from compost

An open database on thermodynamics of enzyme-catalyzed reactions v1

• Project Information
• Project Type: Openstack
• Research Topics: Computational biology Database management Data submission, annotation and curation Biochemistry Biophysics

• Resources
• Available virtual machines: 5
• Total RAM: 20 GB
• Total VCPU Cores: 10 GB
• Number of Volumes: 6
• Amount of volume storage: 100 GB

VRE-Auto-Deploy

• Project Information
• Principal Investigator: Petra Ritter
• Workgroup: Brain Simulation Section / AG Ritter
• Affiliations: Horizon 2020

arunabi-prod

• Project Information
• Principal Investigator: Frank Förster
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Data acquisition

• Resources
• Available virtual machines: 10
• Total RAM: 292 GB
• Total VCPU Cores: 134 GB
• Number of Volumes: 30
• Amount of volume storage: 10240 GB
• Amount of Object Storage: 204800

Big Data Analytics in Life Sciences

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 7
• Research Topics: Gene expression Phylogenomics Phylogenetics Genome annotation Protein variants RNA-Seq Whole genome sequencing

• Resources
• Available virtual machines: 4
• Total RAM: 960 GB
• Total VCPU Cores: 112 GB
• Number of Volumes: 4
• Amount of volume storage: 4000 GB

SPAAM Summer School: Introduction to Ancient Metagenomics

• Project Information
• Workgroup: Microbiome Sciences
• Project Type: Simple Vm
• Project Lifetime: 6

• Resources
• Available virtual machines: 45
• Total RAM: 1440 GB
• Total VCPU Cores: 630 GB
• Number of Volumes: 45
• Amount of volume storage: 4000 GB

Plant_Annotation_TEs

Development of viral vector vaccine

• Project Information
• Research Topics: Immunology

Deep learning applications in life sciences

• Project Information
• Research Topics: Computational biology

Assessing the impact of architectural biases on genetic perturbation modelling

• Project Information
• Research Topics: Gene expression

Soil Microbes of the Fichtelgebirge Mountains

• Project Information
• Research Topics: Microbiology

Drug-drug interaction prediction based on the PharMeBINet database

• Project Information
• Research Topics: Computational biology

Feasibility study Integration of bio-acoustic methods for the quantification of biological diversity into forest monitoring

• Project Information
• Principal Investigator: Zoë Hester
• Workgroup: Ecology and forest dynamics
• Research Topics: Biodiversity Software engineering Machine learning Environmental science

Biomarker detection in DNA Methylation assays using graph neural network

• Project Information
• Research Topics: Biomarkers

Betty

• Project Information
• Research Topics: Simulation experiment

Vicia faba copy number variant calling

• Project Information
• Research Topics: Genetic variation Structural genomics

PBBtools

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Sequence analysis

• Resources
• Available virtual machines: 1
• Total RAM: 32 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 1
• Amount of volume storage: 1000 GB

Multi-Objective Network Generator Of Optimized Single-cell Experiments

• Project Information
• Principal Investigator: Naveed Ishaque
• Workgroup: Computational Oncology
• Project Type: Openstack
• Project Lifetime: 12
• Affiliations: Elixir Project
• Research Topics: Computational biology

• Resources
• Available virtual machines: 1
• Total RAM: 128 GB
• Total VCPU Cores: 32 GB

Bacterial DNA Methylation Motif and Signature Analysis in Human Pathogens

• Project Information
• Principal Investigator: Melanie Schirmer
• Workgroup: Translational Microbiome Data Integration
• Project Type: Simple Vm
• Project Lifetime: 6
• Research Topics: DNA methylation Epigenetics

• Resources
• Available virtual machines: 5
• Total RAM: 320 GB
• Total VCPU Cores: 96 GB
• Number of Volumes: 7
• Amount of volume storage: 8000 GB

Bioimage ANalysis Desktop

• Project Information
• Principal Investigator: Jean-Karim Hériché
• Workgroup: Cell Biology and Biophysics Unit and Centre for BioImage Analysis
• Project Type: Openstack
• Research Topics: Computational biology Cell biology Imaging Informatics Developmental biology

• Resources
• Available virtual machines: 33
• Total RAM: 3870 GB
• Total VCPU Cores: 879 GB
• Number of Volumes: 5
• Amount of volume storage: 12000 GB

MGSE3

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology & Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 9
• Research Topics: Sequence analysis Whole genome sequencing

• Resources
• Available virtual machines: 1
• Total RAM: 480 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 10000 GB

HORORBAC

• Project Information
• Principal Investigator: Stephan Göttig
• Research Topics: Metagenomics Microbiology Bioinformatics Sequence motifs Metagenomic sequencing

HAAM Summer School 2024

Sequence to Pangenome Graph Alignment Benchmark

• Project Information
• Research Topics: Sequence analysis

STELLA II (Infrastructures for Living Labs)

• Project Information
• Research Topics: Ontology and terminology Literature and language Data visualisation Machine learning Simulation experiment

Cassava Transcriptomics

• Project Information
• Research Topics: Gene expression Gene transcription

Annotation of large plant genomes using different annotation tools

• Project Information
• Research Topics: Phylogeny

Funktionelle Mikrobiomfoschung Praktikum 2023/24

• Project Information
• Principal Investigator: Daniel Thomas
• Workgroup: Chair for Ecological Microbiology (Ömik)
• Project Type: Simple Vm
• Research Topics: Metagenomics

KIRGenotyping

• Project Information
• Research Topics: Sequence analysis

Computational Methods for Single-cell Biology

• Project Information
• Workgroup: Institute of Computational Biology
• Project Type: Openstack

• Resources
• Available virtual machines: 10
• Total RAM: 640 GB
• Total VCPU Cores: 160 GB
• Number of Volumes: 10
• Amount of volume storage: 3000 GB
• Amount of Object Storage: 200

GeneROsity - A web platform for gene regulation information of Gammaproteobacteria

• Project Information
• Principal Investigator: Konrad U. Förstner
• Workgroup: Data Science and Services
• Project Type: Openstack
• Research Topics: Sequence analysis Gene expression Biological databases Functional, regulatory and non-coding RNA

CoryneCoExp

• Project Information
• Research Topics: Gene expression

Post-operative tissue puzzling

• Project Information
• Project Type: Openstack
• Research Topics: Pathology Medical imaging

BreedFides ETL pipeline for data trustee implementation test as OpenStack

• Project Information
• Principal Investigator: Florian Hoedt
• Workgroup: Centre of Information Management
• Research Topics: Data acquisition Bioinformatics

Data Curation of the Porpoise Alert Projekt

Integrative Multimodal Models for Advancing Cancer Pathology and Drug Development

• Project Information
• Research Topics: Computational biology

ELIXIR BioHackathon Project 6 BioModelsML 2023

• Project Information
• Research Topics: Proteomics Molecular interactions, pathways and networks Natural language processing Mass spectrometry Bioimaging Machine learning

• Resources
• Available virtual machines: 7
• Total RAM: 528 GB
• Total VCPU Cores: 108 GB
• Number of Volumes: 3
• Amount of volume storage: 10000 GB

Bioschemas resource index for chem and plants

• Project Information
• Research Topics: Ontology and terminology Plant biology Biochemistry

FUNKI

• Project Information
• Workgroup: Saez-Rodriguez Group
• Research Topics: Computational biology

FAIRification of mass spectral library creation

• Project Information
• Research Topics: Lipids Mass spectrometry Metabolomics

Incorporating RNA 3D motifs into RNA secondary structure prediction

• Project Information
• Principal Investigator: Björn Voß
• Workgroup: RNA Biology & Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 9
• Research Topics: RNA Nucleic acid structure prediction

• Resources
• Available virtual machines: 1
• Total RAM: 256 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 30 GB

AI-based Methods for Remote Neonatal Monitoring

• Project Information
• Research Topics: Medical imaging

Decoding the individualized excitability of motor cortex for closed-loop TMS-EEG with Deep learning

• Project Information
• Principal Investigator: Ulf Ziemann
• Workgroup: The department of Neurology & Stroke
• Research Topics: Neurology Machine learning

tutorial single cell RNA sequencing analysis

• Project Information
• Principal Investigator: Nicolas Casadei
• Workgroup: genomics core facility
• Project Type: Openstack
• Project Lifetime: 3
• Research Topics: Gene expression

• Resources
• Available virtual machines: 2
• Total RAM: 32 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 1
• Amount of volume storage: 500 GB

nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling

• Project Information
• Research Topics: Metagenomics

Modeling cell-fate decisions in Olfactory Sensory Neurons

• Project Information
• Principal Investigator: Antonio Scialdone
• Workgroup: Physics and Data-Based Modelling of Cellular Identity Changes
• Project Type: Simple Vm
• Project Lifetime: 12
• Research Topics: Computational biology

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 14 GB

de.NBI & NFDI4Microbiota Linux Introduction

sORFDB - A database for sORFs, small proteins, and small protein groups in bacteria

• Project Information
• Research Topics: Gene and protein families Biological databases Sequence database search Protein databases Sequence databases

HERMIQS - Heart Emergency Rescue Management IQ System

• Project Information
• Principal Investigator: Michael Guckert
• Workgroup: Cognitive Information Systems
• Project Type: Openstack
• Project Lifetime: 18
• Research Topics: Cardiology Machine learning

• Resources
• Available virtual machines: 2
• Total RAM: 320 GB
• Total VCPU Cores: 60 GB
• Number of Volumes: 6
• Amount of volume storage: 3000 GB

VictoriaGenomics

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 18
• Research Topics: Evolutionary biology Genome annotation Gene transcripts Whole genome sequencing

• Resources
• Available virtual machines: 1
• Total RAM: 480 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 30000 GB

spverse hackathon #1

Continuous data integrity testing of the SpatialData framework

• Project Information
• Research Topics: Computational biology

Multiscale immunoimaging

• Project Information
• Principal Investigator: Bettina Weigelin
• Workgroup: Multiscale Immunoimaging
• Project Type: Openstack
• Project Lifetime: 18
• Research Topics: Imaging

• Resources
• Available virtual machines: 1
• Total RAM: 16 GB
• Total VCPU Cores: 8 GB
• Number of Volumes: 1
• Amount of volume storage: 122880 GB

RNASeq Analysis of Murine Intestinal Mucosal Cells (IMCs)

• Project Information
• Principal Investigator: Michael Patrick Menden
• Affiliations: Horizon 2020
• Research Topics: Gene expression Molecular interactions, pathways and networks Immunology Bioinformatics Gene regulation Signaling pathways Immunoinformatics

Scaling Scanpy and scverse projects

• Project Information
• Research Topics: Gene expression Computational biology Software engineering

GRK 2843: Accelerating Crop Genetic Gain

• Project Information
• Research Topics: Sequence analysis Computational biology Plant biology

SPAAM Summer School: Introduction to Ancient Metagenomics

• Project Information
• Research Topics: Metagenomics Bioinformatics

RapeseedColor

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: TU Braunschweig
• Project Type: Simple Vm
• Project Lifetime: 3
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Gene expression Genetic variation

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 1000 GB

PBBtools

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Gene expression

• Resources
• Available virtual machines: 1
• Total RAM: 32 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 1
• Amount of volume storage: 1000 GB

Service Monitoring KPI Dashboard for NFDI4Biodiversity

• Project Information
• Research Topics: Database management Data visualisation Data acquisition

Prevalence and variability of genetic features from environmental and host-associated microbiomes

• Project Information
• Research Topics: Microbiology Functional genomics Population genetics Environmental science

KIPEs4

• Project Information
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Gene expression Computational biology Function analysis

Modeling Cell Migration in the Early Mouse Embryo by Integrating scRNA-sequencing and Imaging Data

• Project Information
• Research Topics: Computational biology

Deep learning-based classification of pancreatobiliary differentiated carcinomas in the liver

• Project Information
• Principal Investigator: Cleo-Aron Thias Weis
• Workgroup: Computational Pathology Heidelberg (AG Weis)
• Research Topics: Pathology Light microscopy

Arabidopsis thaliana transcriptome-phenotype association for gene identification

• Project Information
• Research Topics: Sequence analysis Gene expression Machine learning

THE DARK INTERACTOME

• Project Information
• Research Topics: Protein-nucleic acid interactions

Integrated Crop-Livestock-Systems (GreenDairy)

• Project Information
• Research Topics: Environmental science

Protologger: Automating the description and naming of novel prokaryotes

• Project Information
• Research Topics: Metagenomics Taxonomy

Autoencoder for DNA data storage

• Project Information
• Principal Investigator: Dominik Heider
• Workgroup: Data Science in der Biomedizin
• Project Lifetime: 9
• Research Topics: Computational biology Sequencing Bioinformatics Computer science Machine learning

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 3
• Amount of volume storage: 30 GB

SynMYB

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 3
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Genomics

• Resources
• Available virtual machines: 1
• Total RAM: 16 GB
• Total VCPU Cores: 8 GB
• Number of Volumes: 1
• Amount of volume storage: 200 GB

CassavaGenomics

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 22
• Research Topics: Gene expression Mapping Sequence assembly Genomics

• Resources
• Available virtual machines: 1
• Total RAM: 240 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 5000 GB

Methylation calling for sugar beet

• Project Information
• Research Topics: Computational biology Mapping Genomics Plant biology DNA methylation Epigenomics

de.NBI / ELIXIR / NFDI SpringSchool 2023

• Project Information
• Research Topics: Data acquisition Cheminformatics

Pathobiome of edible insects

• Project Information
• Principal Investigator: Jörg Wennmann
• Research Topics: Sequence assembly Metagenomics Genomics

Mutations in kinases

• Project Information
• Principal Investigator: Rob Russell
• Workgroup: AG-Russell
• Project Type: Simple Vm
• Project Lifetime: 6
• Research Topics: Computational biology

• Resources
• Available virtual machines: 2
• Total RAM: 128 GB
• Total VCPU Cores: 48 GB
• Number of Volumes: 2
• Amount of volume storage: 2048 GB

The GHGA workflow test environment

• Project Information
• Research Topics: Genomics Bioinformatics Workflows High-throughput sequencing

Genome sequence assembly of Urtica dioica

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 24
• Research Topics: Sequence analysis Sequence assembly Sequence annotation Genome annotation Whole genome sequencing

• Resources
• Available virtual machines: 1
• Total RAM: 256 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 1
• Amount of volume storage: 3000 GB

Functional Microbiome Research Practicum UniBayreuth Oemik

• Project Information
• Workgroup: Chair of Ecological Microbiology (Ömik)
• Research Topics: Microbiology Genomics

improving autoencoders for denoising single-cell RNA-Seq data

• Project Information
• Principal Investigator: Simon Anders
• Workgroup: Statistical tools for omics data (AG Anders)
• Research Topics: Omics

EASI-Genomics Cloud

• Project Information
• Research Topics: Omics

ProteinFunction2Vec

• Project Information
• Principal Investigator: Leyla Jael Garcia Castro
• Workgroup: Semantic Technologies team
• Project Type: Openstack
• Project Lifetime: 6
• Research Topics: Ontology and terminology Literature and language Biological databases Natural language processing Protein properties Alignment

• Resources
• Available virtual machines: 1
• Total RAM: 480 GB
• Total VCPU Cores: 28 GB
• Number of Volumes: 3
• Amount of volume storage: 2000 GB

Genomic surveillance of infectious pathogens in Rhineland-Palatinate

• Project Information
• Research Topics: Sequence analysis Phylogeny Microbiology

Reconstruction of strain-specific metabolic models of Staphylococcus haemolyticus

• Project Information
• Principal Investigator: Andreas Dräger
• Workgroup: Systems Biology
• Research Topics: Systems biology Bioinformatics Genome annotation

OncoLabe

• Project Information
• Principal Investigator: Lutsik Pavlo
• Research Topics: Computational biology

de.NBI Biohackathon - Spatial Transcriptomics

• Project Information
• Principal Investigator: Naveed Ishaque
• Research Topics: Imaging Transcription

TaxonOmics Galaxy server for RADseq and Phylogenomics

• Project Information
• Principal Investigator: Miguel Vences
• Workgroup: Evolutionary Biology
• Project Type: Openstack
• Project Lifetime: 27
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Phylogenomics

• Resources
• Available virtual machines: 1
• Total RAM: 512 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 2
• Amount of volume storage: 1000 GB

Models of immunogenic gluten peptides

• Project Information
• Workgroup: Organic and Bioorganic Chemistry, OC III
• Research Topics: Protein interactions Computational biology Protein structure analysis Molecular modelling Structure prediction Molecular dynamics Biochemistry Biophysics Protein disordered structure

6th Differential analysis of quantitative proteomics data using R

• Project Information
• Research Topics: Proteomics Data visualisation Mass spectrometry Statistics and probability

Investigation of the flavonoid biosynthesis in Urtica dioica

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 4
• Research Topics: Gene expression Phylogenomics

• Resources
• Available virtual machines: 1
• Total RAM: 16 GB
• Total VCPU Cores: 8 GB
• Number of Volumes: 1
• Amount of volume storage: 200 GB

GenSurv - NUM Genomic Pathogen Surveillance and Translational Research

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Openstack
• Research Topics: Sequence analysis Biological databases Virology

omnideconv benchmarking

• Project Information
• Research Topics: Computational biology Immunology Bioinformatics

Computational Methods for Single-Cell Biology

• Project Information
• Research Topics: Gene expression Small molecules Medical imaging Genomics Statistics and probability Epigenomics Machine learning

MPXRadar: Genomic surveillance of monkeypox

• Project Information
• Principal Investigator: Stephan Fuchs
• Workgroup: MF1 - Bioinformatics Unit
• Project Type: Openstack
• Project Lifetime: 32
• Research Topics: Sequence analysis Database management Genetic variation Data visualisation Bioinformatics

• Resources
• Available virtual machines: 5
• Total RAM: 144 GB
• Total VCPU Cores: 66 GB
• Number of Volumes: 5
• Amount of volume storage: 500 GB
• Amount of Object Storage: 100

Omik Nanopore Basecaller

• Project Information
• Principal Investigator: Tillmann Lueders
• Workgroup: Bayreuth Center of Ecology and Environmental Research, Chair of Ecological Microbiology
• Project Type: Simple Vm
• Project Lifetime: 2
• Research Topics: Sequencing

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 14 GB
• Number of Volumes: 1
• Amount of volume storage: 1000 GB

Kidney Memory

• Project Information
• Research Topics: Computational biology

NFDI4Microbiota Virus Database (VirJen)

• Project Information
• Research Topics: Database management Virology

Kuberntes Cluster for Research Data Commons Applications

• Project Information
• Research Topics: Workflows Data integration and warehousing

Luxembourg-German-Indian Alliance on Neurodegenerative diseases and Therapeutics

• Project Information
• Principal Investigator: Manu Sharma
• Research Topics: Sequence analysis Genomics Genotype and phenotype

LipidCompass - a comprehensive database for quantative lipidomics

• Project Information
• Principal Investigator: Nils Hoffmann
• Project Type: Openstack
• Research Topics: Lipids Molecular interactions, pathways and networks Biological databases Data visualisation Bioinformatics Analytical chemistry

QSM4SENIOR: Ultra-high Field MRI Quantitative Susceptibility Mapping reconstruction of the healthy Brain-aging cohort

• Project Information
• Affiliations: Horizon 2020
• Research Topics: Medical imaging Computer science Biomedical science Neurology

DNAqua.Net - Metabarcoding pipeline

• Project Information
• Research Topics: Ecology Molecular biology

Multi-cloud enabled metagenome workflows (Giessen)

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Research Topics: Metagenomics

Pangenomics Benchmark & Workbench (Server)

• Project Information
• Workgroup: Genome Informatics
• Affiliations: Horizon 2020
• Research Topics: Comparative genomics

Multi-cloud enabled metagenome workflows (Bielefeld)

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Research Topics: Metagenomics

Flavonoid biosynthesis of Urtica dioica

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 9
• Research Topics: Sequence analysis Phylogeny Gene expression

• Resources
• Available virtual machines: 1
• Total RAM: 4 GB
• Total VCPU Cores: 2 GB
• Number of Volumes: 1
• Amount of volume storage: 20 GB

Expression Atlas of Ectocarpus and other brown algae

• Project Information
• Principal Investigator: Susana Coelho
• Research Topics: Gene expression

WGS - pipeline

• Project Information
• Principal Investigator: Andreas Jung
• Workgroup: Jung Lab
• Project Type: Openstack
• Project Lifetime: 18
• Research Topics: Sequence sites, features and motifs

• Resources
• Available virtual machines: 1
• Total RAM: 256 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 2
• Amount of volume storage: 200 GB
• Amount of Object Storage: 4500

Differential regulation of gene expression through DNA methylation: investigating the molecular link between early life adversit

• Project Information
• Workgroup: Molecular Psychiatry
• Research Topics: Gene expression Molecular interactions, pathways and networks Gene transcription Human biology RNA-Seq DNA methylation Epigenomics Transcriptomics Psychiatry

Database development for PrecisionTox project

• Project Information
• Principal Investigator: Robert Russell
• Workgroup: Russell Group
• Project Type: Openstack
• Project Lifetime: 6
• Affiliations: Horizon 2020
• Research Topics: Toxicology

• Resources
• Available virtual machines: 2
• Total RAM: 16 GB
• Total VCPU Cores: 8 GB
• Number of Volumes: 2
• Amount of volume storage: 1000 GB

SPAAM Summer School: Introduction to Ancient Metagenomics

• Project Information
• Project Type: Simple Vm
• Project Lifetime: 6
• Research Topics: Metagenomics

• Resources
• Available virtual machines: 32
• Total RAM: 1024 GB
• Total VCPU Cores: 448 GB
• Number of Volumes: 34
• Amount of volume storage: 3000 GB

Deploying and exploring omics data sets via web apps from an offline repository via the MAMPOK tool

• Project Information
• Principal Investigator: Mario Looso
• Workgroup: Bioinformatics Core
• Research Topics: Sequence analysis Gene expression Computational biology Protein expression

• Resources
• Available virtual machines: 4
• Total RAM: 1024 GB
• Total VCPU Cores: 112 GB
• Number of Volumes: 3
• Amount of volume storage: 20 GB

OTCgenomics

• Project Information
• Principal Investigator: Matthias Labrenz
• Affiliations: BMBF
• Research Topics: Sequence analysis Microbial ecology

Flower Pigmentation Analysis

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Lifetime: 7
• Research Topics: Sequence analysis Phylogeny Gene expression Genetic variation

• Resources
• Available virtual machines: 1
• Total RAM: 16 GB
• Total VCPU Cores: 8 GB
• Number of Volumes: 1
• Amount of volume storage: 50 GB

DNA-Aeon

• Project Information
• Research Topics: Bioinformatics DNA mutation Machine learning

Large-scale recovery of metagenome-assemble genomes from marine samples

• Project Information
• Principal Investigator: Ulisses Nunes da Rocha
• Project Type: Openstack
• Research Topics: Phylogenomics

• Resources
• Available virtual machines: 18
• Total RAM: 5440 GB
• Total VCPU Cores: 528 GB
• Number of Volumes: 3
• Amount of volume storage: 100 GB

Genomic and Epigenomic Variation in different Riesling Grapevine clones

• Project Information
• Principal Investigator: Kai Peter Voss-Fels
• Workgroup: Rebengenomik
• Project Type: Openstack
• Project Lifetime: 33
• Research Topics: Sequence analysis Phylogeny Mapping Genetic variation Sequence composition, complexity and repeats

• Resources
• Available virtual machines: 10
• Total RAM: 1024 GB
• Total VCPU Cores: 188 GB
• Number of Volumes: 4
• Amount of volume storage: 8000 GB

Risikostratifizierung in der Kardiologie mittels Kuenstlicher Intelligenz

• Project Information
• Principal Investigator: Till Keller
• Workgroup: CardioIQ
• Project Type: Openstack
• Project Lifetime: 36
• Research Topics: Bioinformatics Cardiology Machine learning

RhizoTraits - RhizoMicro

• Project Information
• Principal Investigator: Tillmann Lueders
• Workgroup: Ecological Microbiology
• Affiliations: BMBF
• Research Topics: Sequence analysis Microbial ecology Agricultural science

Volumetries in Moyamoya patients

• Project Information
• Research Topics: Medical imaging

Benchmark of membrane segmentation for Cryo-ET

• Project Information
• Principal Investigator: Tingying Peng
• Workgroup: Helmholtz AI
• Research Topics: Computational biology

• Resources
• Available virtual machines: 3
• Total RAM: 320 GB
• Total VCPU Cores: 76 GB
• Number of Volumes: 3
• Amount of volume storage: 3000 GB

Finding transcription factors in plant genomes

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Lifetime: 14
• Research Topics: Sequence sites, features and motifs Sequence analysis Phylogeny Gene expression Protein folds and structural domains Protein properties

• Resources
• Available virtual machines: 1
• Total RAM: 8 GB
• Total VCPU Cores: 4 GB
• Number of Volumes: 1
• Amount of volume storage: 100 GB

Organellar DNA Detection

• Project Information
• Research Topics: Genomics Genome annotation

Illumination correction for light-sheet microscopy

• Project Information
• Principal Investigator: Tingying Peng
• Workgroup: Helmholtz AI
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Bioimaging

• Resources
• Available virtual machines: 2
• Total RAM: 128 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 2
• Amount of volume storage: 1000 GB

Methylation-based classification of brain tumors using nanopore sequencing (nanoDx): a prospective, multicentric evaluation

• Project Information
• Principal Investigator: Philipp Euskirchen
• Workgroup: Molecular Neuro-Oncology
• Research Topics: Oncology Epigenetics Machine learning

Theodoxus fluviatilis genomes 2021

• Project Information
• Principal Investigator: Jan-Peter Hildebrandt
• Workgroup: Animal physiology and biochemistry
• Research Topics: Whole genome sequencing

Gluten related disorder under the microscope

• Project Information
• Research Topics: Cell biology Light microscopy Molecular medicine Disease pathways

Basecalling for Crop Plant ONT data

• Project Information
• Research Topics: Sequence analysis Computational biology Sequence assembly Plant biology Comparative genomics Epigenetics Whole genome sequencing

Oemik Functional Microbiome Analysis

• Project Information
• Research Topics: Sequence analysis Metagenomics

Omics in Huntington disease

• Project Information
• Workgroup: Experimental Neurology
• Project Lifetime: 12
• Research Topics: Repeat sequences Human disease RNA splicing Neurobiology

• Resources
• Available virtual machines: 2
• Total RAM: 256 GB
• Total VCPU Cores: 64 GB
• Number of Volumes: 3
• Amount of volume storage: 2000 GB

Investigate the mechanism of Pemphigus Vulgaris by omics data analysis and integration

• Project Information
• Principal Investigator: Hauke Busch
• Workgroup: Computational biology
• Project Type: Openstack
• Project Lifetime: 18
• Research Topics: Bioinformatics

• Resources
• Available virtual machines: 1
• Total RAM: 128 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 2
• Amount of volume storage: 200 GB
• Amount of Object Storage: 200

Genomics assemblies and massive resequencing of birds of prey

• Project Information
• Research Topics: Function analysis Phylogenomics Microbiology Genomics Vertebrates Biodiversity Parasitology Infectious disease

Jupyter Hub

• Project Information
• Principal Investigator: Matthias Schlesner
• Workgroup: Biomedizinische Informatik, Data Mining und Data Analytics
• Project Type: Simple Vm
• Project Lifetime: 43
• Research Topics: Sequence analysis

• Resources
• Available virtual machines: 5
• Total RAM: 320 GB
• Total VCPU Cores: 140 GB
• Number of Volumes: 5
• Amount of volume storage: 2200 GB

cBioPortal server

• Project Information
• Principal Investigator: Matthias Schlesner
• Workgroup: Biomedical Informatics, Data Mining and Data Analytics
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Genomics Oncology Transcriptomics

• Resources
• Available virtual machines: 4
• Total RAM: 128 GB
• Total VCPU Cores: 64 GB
• Number of Volumes: 4
• Amount of volume storage: 3500 GB

Dedicated Protein and RNA Structure Prediction Capabilities for the Wagner Lab

• Project Information
• Principal Investigator: Samuel Wagner
• Research Topics: Small molecules Microbiology Pathogens Transmembrane protein prediction

SSAM-lite-server

• Project Information
• Research Topics: Imaging High-throughput sequencing Transcriptomics

Metagenomics Summerschool 2021

• Project Information
• Research Topics: Sequence analysis Metagenomics

FlowSoFine

• Project Information
• Principal Investigator: Stefan Janssen
• Workgroup: Algorithmic Bioinformatics
• Research Topics: Microbial ecology

SILVA release

• Project Information
• Research Topics: Biological databases rRNA

Analysis of flavonoid biosynthesis pathway across plant species

• Project Information
• Principal Investigator: Boas Pucker
• Workgroup: Plant Biotechnology and Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 9
• Research Topics: Phylogeny Genomics Splice sites

• Resources
• Available virtual machines: 1
• Total RAM: 32 GB
• Total VCPU Cores: 14 GB
• Number of Volumes: 1
• Amount of volume storage: 100 GB

Generative models to disentangle spatial components of cellular variation

• Project Information
• Research Topics: Computational biology Machine learning

Genetic analysis of Cercospora leaf spot resistance in wild and cultivated beets

• Project Information
• Research Topics: Agricultural science

LIFS Portal

• Project Information
• Research Topics: Lipids Bioinformatics Mass spectrometry

GPU_BASE

• Project Information
• Research Topics: Genomics Plant biology

BaktaWeb

• Project Information
• Research Topics: Sequence annotation Genome annotation

4D Controls-based denoising

• Project Information
• Research Topics: Medical imaging MRI Applied mathematics

Computational Psychiatry

• Project Information
• Principal Investigator: Tobias Kaufmann
• Research Topics: Computational biology Medical imaging Genetics Neurobiology Psychiatry

Machine Learning for Protein Identification

• Project Information
• Research Topics: Proteomics Machine learning

HTS of Xcc mutant strains using CellProfiler

• Project Information
• Research Topics: Imaging Microbiology

Bioimage.io Model Zoo

• Project Information
• Principal Investigator: Florian Jug
• Workgroup: Jug Lab
• Project Type: Openstack
• Project Lifetime: 46
• Affiliations: BMBF
• Research Topics: Cell biology Bioinformatics Bioimaging Machine learning

• Resources
• Available virtual machines: 7
• Total RAM: 800 GB
• Total VCPU Cores: 172 GB
• Number of Volumes: 100
• Amount of volume storage: 1024 GB
• Amount of Object Storage: 100

Extending cross-linking mass spectrometry with cleavable cross-linkers

• Project Information
• Research Topics: Protein interactions Proteomics Protein structure analysis

Determination of the conformational loop flexibility of strongly neutralizing COV-2 antibody fragments.

• Project Information
• Research Topics: Protein interactions Protein structure analysis Structure prediction Molecular dynamics

Machine Learning for Antibiiotic Resistance 2

• Project Information
• Research Topics: Bioinformatics Machine learning

RNA-RNA interaction prediction evaluation

• Project Information
• Research Topics: Nucleic acid structure analysis

Identification of causative variants in patients with genetically unclassified severe congenital neutropenia

• Project Information
• Principal Investigator: Maksim Klimiankou
• Workgroup: Internal Medicine II, Division of Translational Oncology
• Project Type: Openstack
• Project Lifetime: 48
• Research Topics: Sequencing Molecular genetics

• Resources
• Available virtual machines: 1
• Total RAM: 256 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 1
• Amount of volume storage: 6000 GB

WebDECIMER

• Project Information
• Principal Investigator: Christoph Steinbeck
• Workgroup: Steinbeck group
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Small molecules Literature analysis Literature data resources

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 1
• Amount of volume storage: 80 GB
• Amount of Object Storage: 10

Automated Analysis of Microscopy Images Using Deep Learning

• Project Information
• Principal Investigator: Rohr Karl
• Workgroup: Biomedical Computer Vision Group
• Affiliations: BMBF Elixir Project
• Research Topics: Cell biology Biomedical science Bioimaging Light microscopy Machine learning

de.NBI Training Event: "The Linux Command Line: From Basic Commands to Shell Scripting"

• Project Information
• Workgroup: Bioinformatics Core
• Research Topics: Computational biology Bioinformatics Computer science

Diatom Virtual Slide Storage

• Project Information
• Research Topics: Ecology Taxonomy Bioimaging Light microscopy Machine learning Freshwater biology

Bellman's GAP for deep learning

• Project Information
• Principal Investigator: Stefan Janssen
• Workgroup: Algorithmic Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 48
• Research Topics: Computer science

• Resources
• Available virtual machines: 2
• Total RAM: 48 GB
• Total VCPU Cores: 20 GB
• Number of Volumes: 3
• Amount of volume storage: 150 GB

RNAProNet - Infer regulatory behavior from RNA protein binding events

• Project Information
• Principal Investigator: Rolf Backofen
• Workgroup: Chair for Bioinformatics
• Project Type: Simple Vm
• Project Lifetime: 48
• Affiliations: BMBF
• Research Topics: Protein interactions High-throughput sequencing Machine learning

• Resources
• Available virtual machines: 1
• Total RAM: 64 GB
• Total VCPU Cores: 16 GB
• Number of Volumes: 3
• Amount of volume storage: 1000 GB

ECF Hub - An interactive database for ECF sigma factors

• Project Information
• Principal Investigator: Alexander Goesmann
• Workgroup: Professur für Systembiologie
• Project Type: Openstack
• Project Lifetime: 12
• Affiliations: BMBF
• Research Topics: Biological databases Protein databases Synthetic biology

• Resources
• Available virtual machines: 3
• Total RAM: 48 GB
• Total VCPU Cores: 24 GB
• Number of Volumes: 20
• Amount of volume storage: 750 GB
• Amount of Object Storage: 750

EMIC sequencing pipeline

• Project Information
• Research Topics: Sequence analysis Microbial ecology Environmental science

Evaluation of genome assembly tools for Triticeae

• Project Information
• Principal Investigator: HARMEET SINGH CHAWLA
• Workgroup: Plant Genome and System Biology
• Project Type: Openstack
• Project Lifetime: 6
• Research Topics: Plant biology Whole genome sequencing

• Resources
• Available virtual machines: 1
• Total RAM: 3000 GB
• Total VCPU Cores: 64 GB
• Number of Volumes: 3
• Amount of volume storage: 50000 GB

Cis-regulatory atlas of Brassica napus

• Project Information
• Research Topics: Gene expression Genetic variation Genomics Bioinformatics Gene regulation Plant biology DNA structural variation

SIMBA Metagenome Training Course

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Simple Vm
• Project Lifetime: 3
• Affiliations: Horizon 2020
• Research Topics: Sequence analysis Metagenomics

• Resources
• Available virtual machines: 2
• Total RAM: 96 GB
• Total VCPU Cores: 42 GB
• Number of Volumes: 2
• Amount of volume storage: 500 GB

SFB1324 - Data Exchange and Collaborative Analysis

• Project Information
• Research Topics: Sequence analysis Protein structure analysis Cell biology Imaging Functional genomics Signaling pathways

VascuShare: a vascular imaging data repository

• Project Information
• Principal Investigator: Kyle Harrington
• Research Topics: Imaging Bioinformatics Bioimaging

Applying - Helixer, Gene Structural Prediction with Deep Learning

• Project Information
• Principal Investigator: Andreas Weber
• Workgroup: Institute of Plant Biochemistry
• Project Type: Openstack
• Project Lifetime: 10
• Research Topics: Sequence analysis Gene structure Machine learning

• Resources
• Available virtual machines: 3
• Total RAM: 384 GB
• Total VCPU Cores: 60 GB
• Number of Volumes: 6
• Amount of volume storage: 3000 GB
• Amount of Object Storage: 1000

Covalent and kinetic trapping repair machinery for structural and functional studies

• Project Information
• Research Topics: Protein interactions Protein structure analysis Enzymes Nucleic acids

ChIP-seq / ATAC-seq workshop

• Project Information
• Principal Investigator: Herrmann Carl
• Workgroup: HDSU
• Project Type: Simple Vm
• Project Lifetime: 15
• Research Topics: Computational biology

• Resources
• Available virtual machines: 2
• Total RAM: 512 GB
• Total VCPU Cores: 64 GB
• Number of Volumes: 2
• Amount of volume storage: 500 GB

Decoding Context-Dependent Genetic Networks in vivo

• Project Information
• Principal Investigator: Stegle Oliver
• Workgroup: ERC Decode Project
• Project Type: Openstack
• Affiliations: Horizon 2020
• Research Topics: Computational biology

de.NBI - CeBiTec Nanopore Workshop - Best Practice and SARS-CoV-2 applications

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: BiGi
• Project Type: Simple Vm
• Project Lifetime: 3
• Affiliations: BMBF
• Research Topics: Sequence analysis Sequencing Sequence assembly Virology

• Resources
• Available virtual machines: 22
• Total RAM: 704 GB
• Total VCPU Cores: 352 GB
• Number of Volumes: 30
• Amount of volume storage: 1500 GB

Using machine learning approaches to predict antimicrobial resistance from bacterial genome sequences

• Project Information
• Principal Investigator: Oliver Kohlbacher
• Project Type: Simple Vm
• Project Lifetime: 9
• Research Topics: Pathogens Machine learning

Alignment- and reference-free Phylogenomics

• Project Information
• Principal Investigator: Jens Stoye
• Workgroup: Genome Informatics
• Project Type: Simple Vm
• Project Lifetime: 54
• Research Topics: Sequence analysis Phylogeny

• Resources
• Available virtual machines: 1
• Total RAM: 1024 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 2
• Amount of volume storage: 3000 GB

Integrative analysis of common and rare high-impact variants for a more comprehensive genetic risk assessment.

HuMAGs - exploring how microbes co-exist in human microbiomes

• Project Information
• Principal Investigator: Ulisses Nunes da Rocha
• Workgroup: Microbia Data Science
• Project Type: Openstack
• Project Lifetime: 53
• Research Topics: Sequence analysis Computational biology Function analysis Biological databases Phylogenomics Metagenomics Microbiology Human disease Microbial ecology

• Resources
• Available virtual machines: 29
• Total RAM: 4352 GB
• Total VCPU Cores: 768 GB
• Number of Volumes: 3
• Amount of volume storage: 100000 GB

Cloud User Meeting 2020

• Project Information
• Principal Investigator: Alexander Sczyrba
• Project Type: Openstack
• Research Topics: Bioinformatics

• Resources
• Available virtual machines: 100
• Total RAM: 1300 GB
• Total VCPU Cores: 650 GB
• Number of Volumes: 50
• Amount of volume storage: 275 GB
• Amount of Object Storage: 100

Meet-U 4EU+ Teaching project

• Project Information
• Principal Investigator: Herrmann Carl
• Research Topics: Computational biology

Using NLP-Networks (Transformers) for human genome data

• Project Information
• Research Topics: Computational biology Bioinformatics Biomedical science Sequence classification

SIRIUS back end

• Project Information
• Workgroup: Chair of Bioinformatics
• Project Type: Openstack
• Research Topics: Metabolites Computer science Mass spectrometry Metabolomics Computational chemistry

Sequence-based prediction of Translational Efficiency

• Project Information
• Principal Investigator: Pascal Falter-Braun
• Workgroup: Network Biology
• Research Topics: Sequence analysis Protein interactions Computational biology

SDC BioDATEN

• Project Information
• Research Topics: Ontology and terminology Computational biology Database management

Generation of Mass Spectrometry Decoy Spectra with Adversarial Autoencoders

• Project Information
• Research Topics: Proteomics Mass spectrometry

CovRadar: a web application for SARS-CoV-2 molecular surveillance

• Project Information
• Principal Investigator: Stephan Fuchs
• Workgroup: Methodology and Research Infrastructure - MF1: Bioinformatics
• Project Type: Openstack
• Project Lifetime: 55
• Research Topics: Sequence analysis Data visualisation Bioinformatics Virology Protein variants Public health and epidemiology

• Resources
• Available virtual machines: 3
• Total RAM: 1061 GB
• Total VCPU Cores: 112 GB
• Number of Volumes: 5
• Amount of volume storage: 5120 GB
• Amount of Object Storage: 1024

Innovative benchmarking approaches to improve Computational Methods for big data analysis in Health.

• Project Information
• Principal Investigator: Herrmann Carl
• Workgroup: Health Data Science Unit, Medical Faculty
• Research Topics: Computational biology Genomics Gene regulation Oncology

Proteomics of the Springtail Folsomia Candida

• Project Information
• Principal Investigator: Oliver Kohlbacher
• Workgroup: Applied Bioinformatics
• Research Topics: Proteomics Protein expression

Modeling and simulation of multicellular processes during tissue morphogenesis

• Project Information
• Principal Investigator: Lutz Brusch
• Workgroup: Center for Information Services and High Performance Computing
• Research Topics: Computational biology Personalised medicine

Myzel - Medical Cloud Platform

• Project Information
• Principal Investigator: Maier-Hein Klaus
• Workgroup: Medical Image Computing
• Project Type: Openstack
• Project Lifetime: 12
• Research Topics: Medical imaging Natural language processing

• Resources
• Available virtual machines: 2
• Total RAM: 384 GB
• Total VCPU Cores: 60 GB
• Number of Volumes: 2
• Amount of volume storage: 2000 GB

Ganon in the 2 nd round of the CAMI II challenge

• Project Information
• Research Topics: Sequence analysis Metagenomics

Wheat Structural Variant Calling

• Project Information
• Research Topics: Structure analysis Genetic variation

A R Shiny based web server for performing BLAST queries on novel SARS-CoV2 sequences

• Project Information
• Principal Investigator: Herrmann Carl
• Workgroup: Health Data Science Unit
• Research Topics: Sequence analysis Infectious disease

kmer based spa typing

• Project Information
• Principal Investigator: Gunnar W. Klau
• Workgroup: Algorithmische Bioinformatik
• Project Type: Simple Vm
• Project Lifetime: 3

• Resources
• Available virtual machines: 1
• Total RAM: 256 GB
• Total VCPU Cores: 32 GB
• Number of Volumes: 1
• Amount of volume storage: 500 GB

Biohackathon Coivd19

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Openstack
• Project Lifetime: 6

• Resources
• Available virtual machines: 3
• Total RAM: 192 GB
• Total VCPU Cores: 96 GB
• Number of Volumes: 3
• Amount of volume storage: 20 GB

denbivsvirus Bielefeld

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Openstack
• Project Lifetime: 30

• Resources
• Available virtual machines: 5
• Total RAM: 636 GB
• Total VCPU Cores: 88 GB
• Number of Volumes: 5
• Amount of volume storage: 2000 GB
• Amount of Object Storage: 500

WirVsVirus Hackathon der Bundesregierung

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Openstack

Benchmarking proteomics nextflow workflows on PRIDE data

• Project Information
• Principal Investigator: Oliver Kohlbacher
• Workgroup: Applied Bioinformatics

Performance improvements of DNA methylome deconvolution software MeDeCom

visualization webtool for deep learning features

de.NBI Training

• Project Information
• Principal Investigator: Malik Alawi
• Workgroup: Bioinformatics Core

Petasearch Database Creation

Gene Structural Prediction with Deep Learning

• Project Information
• Principal Investigator: Andreas Weber
• Workgroup: Plant Biochemistry
• Project Type: Openstack

Understanding gluten related disorders at the molecular level

• Project Information
• Principal Investigator: Veronica Dodero

Rheuma.Vor.Transcriptomics

• Project Information
• Principal Investigator: Schwarting Andreas
• Workgroup: Ambulanz für Rheumatologie,
• Project Type: Simple Vm

metagenomic analysis of human infant fecal sample

• Project Information
• Principal Investigator: Daniel Huson
• Workgroup: algorithm in bioinformatics
• Project Type: Openstack
• Project Lifetime: 60

• Resources
• Available virtual machines: 4
• Total RAM: 1024 GB
• Total VCPU Cores: 128 GB
• Number of Volumes: 4
• Amount of volume storage: 20000 GB
• Amount of Object Storage: 150

Elucidating the origin of planktonic foraminifera

• Project Information
• Principal Investigator: Michal Kucera
• Workgroup: Micropaleontology
• Project Lifetime: 60

• Resources
• Available virtual machines: 10
• Total RAM: 2560 GB
• Total VCPU Cores: 320 GB
• Number of Volumes: 10
• Amount of volume storage: 10000 GB

Type Strain Genome Server (TYGS)

• Project Information
• Principal Investigator: Markus Göker
• Workgroup: Phylogenomics (Department of Bioinformatics)
• Project Type: Openstack

Bioschemas knowledge graph - BH2019Europe

GCB 2019 Cloud Tutorial

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: de.NBI Cloud Team
• Project Type: Openstack
• Project Lifetime: 1
• Affiliations: BMBF

• Resources
• Available virtual machines: 60
• Total RAM: 3840 GB
• Total VCPU Cores: 1680 GB
• Number of Volumes: 25
• Amount of volume storage: 200 GB
• Amount of Object Storage: 1000

Sustainable Innovation of Microbiome Applications in the Food System

• Project Information
• Principal Investigator: Alexander Sczyrba
• Workgroup: Computational Metagenomics
• Project Type: Openstack